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Requirements and specification of bioinformatics use cases
Friedrich-Schiller-Universität Jena, Germany.
National Institute for Research and Development in Informatics, Bucharest, Romania.
Universidade Nova de Lisboa, Portugal.
University of Skövde, Sweden.
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2005 (English)Report (Other academic)
Abstract [en]

This deliverable specifies use cases based on bioinformatics research carried out by members ofA2. The use cases involve the use of rules to reason over ontologies and pathways (Dresden,Edinburgh, Paris, Linköping) and rules to specify workflows to integrate bioinformatics data (Lisbon, Skövde, Jena, Bucharest). The use cases are designed as a reference point to foster the take up of A2 use cases by I-work packages. Most notably, many of the use cases specify the need for querying and reactivity with languages like Xcerpt (I4), Erus (I5) and Prova (I5). The use cases range from basic research applications to fully deployed software with an international user base.

Place, publisher, year, edition, pages
2005.
Keyword [en]
Use cases, bioinformatics, metabolic pathways, PubMed, GeneOntology, gene expression data, sequence alignment, PDB, SCOP, ontologies, web services, databases, rules, reasoning, XML
National Category
Computer Science
Identifiers
URN: urn:nbn:se:hj:diva-18773OAI: oai:DiVA.org:hj-18773DiVA: diva2:542767
Note
Project co-funded by the European Commission and the Swiss Federal Office for Education and Science within the Sixth Framework Programme.Available from: 2012-08-03 Created: 2012-06-27 Last updated: 2012-08-03Bibliographically approved

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Citation style
  • apa
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  • ieee
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Output format
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