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Representing, storing and accessing molecular interaction data: a review of models and tools
Linköping University, Department of Computer and Information Science, IISLAB - Laboratory for Intelligent Information Systems.
Linköping University, Department of Computer and Information Science, IISLAB - Laboratory for Intelligent Information Systems.
Linköping University, Department of Computer and Information Science, IISLAB - Laboratory for Intelligent Information Systems.
Linköping University, Department of Computer and Information Science, IISLAB - Laboratory for Intelligent Information Systems.
2006 (English)In: Briefings in Bioinformatics, ISSN 1467-5463, E-ISSN 1477-4054, Vol. 7, no 4, p. 331-338Article in journal (Refereed) Published
Abstract [en]

One important aim within systems biology is to integrate disparate pieces of information, leading to discovery of higher-level knowledge about important functionality within living organisms. This makes standards for representation of data and technology for exchange and integration of data important key points for development within the area. In this article, we focus on the recent developments within the field. We compare the recent updates to the three standard representations for exchange of data SBML, PSI MI and BioPAX. In addition, we give an overview of available tools for these three standards and a discussion on how these developments support possibilities for data exchange and integration.

Place, publisher, year, edition, pages
2006. Vol. 7, no 4, p. 331-338
Keywords [en]
molecular interactions, cellular pathways, standardization, SBML, PSI MI, BioPAX, Computer science, Datavetenskap
National Category
Computer Sciences
Identifiers
URN: urn:nbn:se:hj:diva-18770DOI: 10.1093/bib/bbl039OAI: oai:DiVA.org:hj-18770DiVA, id: diva2:542159
Available from: 2012-07-30 Created: 2012-06-27 Last updated: 2018-01-12Bibliographically approved

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Tan, He

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